The Resident Evil series can get pretty dark, though it isn't always very emotional, though it definitly can be. The story is still very interesting, despite occasional lack of emotion, and you should probably check it out, though it's probably a moot point, considering you've probably already played at least one or two in the series.
And, though not always very dark, the Zone of the Enders(produced by Hideo Kojima) series is very emotional and carries a very compelling story. The gameplay is a little weak in the first game(which itself is very short), but the second game is longer and carries a much stronger challenge, while maintaining everything that made the first game good.
I had a few other games come to mind, but I forget. Please look into what I have recommended, you have my word that you will not regret it.
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