Hi there!
It's always fun to upgrade a gaming computer; I did a major system overhaul last December and had a fun time doing it. You seem to have a pretty clear idea of what you want, which is key. :-)
You can definitely have your OS installed on an SSD and buy a larger and cheaper hard drive for storage purposes. I'm a bit concerned with noise personally, and usually prefer to keep my system free of mechanical parts, such as standard hard drives and optical drives, but the option is there depending on your storage needs and budget. Also, keep in mind that larger SSDs, like 480GB and higher, tend to perform a bit faster. But the difference is subtle. And if you haven't already, you'll probably hear or read about the new interface standards that are being gradually introduced for SSDs to replace the SATA interface. Might be worth checking out, even though I guess it's a bit early for that.
Barebone kits still exist but aren't as popular as they once were. Frankly, motherboard and CPU installation has become so easy, with very little to configure in most cases, that you probably won't have any troubles, especially considering you've built computers before. The only tricky part is selecting the motherboard out of dozens of different models available within the same price range. Verify what standards it supports, such as the CPU socket type, the memory generation and clock speed, the number and speed of the USB ports, and of course, which interface is used for the hard drives and SSDs that will be plugged in it.
More experienced users will surely chime in too, but don't forget the most crucial part: Have fun!
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