1) The nuke would've wiped out EVERYTHING, including him, if it detonated above land. Also alex doesnt want to wipe out the population in P2, he wants to make an army of evolved, cant do that if theyre all dead. 2) In P1 he thought he was alex mercer. He comes to find out that alex mercer died, and the virus just copied the freshly dead alex mercer, so when the virus "woke up" it believed it was alex. After finding this out towards the end of P1, along with how powerful he had become, its easy to see why he did a 180. (Although i really dont like it, since he went from being a complex character to the same old run of the mill "I want to take over the world" kind of villain. Yuk.) 3) the nuke detonation caused that from P1 4) that bloody mess wasnt from what alex beat up, that was alex splattered all over the place from the detonation of the nuke, and it grabbed a crow to regenerate.
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